Journal club - ANGEN

2024.

JC3. 21.11.2024.

GAbridge

Ren, Y., Khatkar, M. S., MacPhillamy, C., Wang, H., McEwin, R. A., Chen, T., Pitchford, W. S., & Low, W. Y. (2024). Evaluating the Efficacy of Target Capture Sequencing for Genotyping in Cattle. Genes, 15(9), 1218. https://doi.org/10.3390/genes15091218

PhenoGeno

Brajkovic, V., Pocrnic, I., Kaps, M., Špehar, M., Cubric-Curik, V., Ristov, S., Novosel, D., Gorjanc, G., & Curik, I. (2024). Quantifying the effects of the mitochondrial genome on milk production traits in dairy cows: empirical results and modelling challenges. Journal of dairy science, S0022-0302(24)01221-9. Advance online publication. https://doi.org/10.3168/jds.2024-25203

JC2. PhenoGeno - 31.10.2024.

Sanglard L.P., Kuehn L.A., Snelling W.M., Spangler M.L. (2022) Influence of environmental factors and genetic variation on mitochondrial DNA copy number. J Anim Sci http://doi: 10.1093/jas/skac059

JC1. GAbridge - 24.10.2024.

Günther, T., Chisausky, J., Galindo-Pellicena, M. Á., Iriarte, E., Cortes Gardyn, O., ... & Valdiosera, C. (2024.) The Genomic Legacy of Human Management and sex-biased Aurochs hybridization in Iberian Cattle. eLife https://elifesciences.org/reviewed-preprints/93076

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2023.

JC14. - 02.02.2023.

Daly, K. G., Mattiangeli, V., Hare, A. J., Davoudi, H., Fathi, H., Doost, S. B., ... & Bradley, D. G. (2021). Herded and hunted goat genomes from the dawn of domestication in the Zagros Mountains. Proceedings of the National Academy of Sciences, 118(25), e2100901118. https://doi.org/10.1073/pnas.2100901118

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2022.

JC13. - 24.02.2022.

Gaynor, R. C., Gorjanc, G., & Hickey, J. M. (2021). AlphaSimR: an R package for breeding program simulations. G3, 11(2), jkaa017. https://doi.org/10.1093/g3journal/jkaa017

JC12. - 17.02.2022.

Santiago, E., Novo, I., Pardiñas, A. F., Saura, M., Wang, J., & Caballero, A. (2020). Recent demographic history inferred by high-resolution analysis of linkage disequilibrium. Molecular Biology and Evolution, 37(12), 3642-3653. https://doi.org/10.1093/molbev/msaa169

JC11. - 03.02.2022.

Bittante, G., Penasa, M., & Cecchinato, A. (2012). Invited review: Genetics and modeling of milk coagulation properties. Journal of dairy science, 95(12), 6843-6870. https://doi.org/10.3168/jds.2012-5507

Frizzarin, M., Gormley, I. C., Berry, D. P., Murphy, T. B., Casa, A., Lynch, A., & McParland, S. (2021). Predicting cow milk quality traits from routinely available milk spectra using statistical machine learning methods. Journal of Dairy Science, 104(7), 7438-7447. https://doi.org/10.3168/jds.2020-19576

JC10. - 27.01.2022.

Dadousis, C., Biffani, S., Cipolat-Gotet, C., Nicolazzi, E. L., Rossoni, A., Santus, E., Bittante A., Cecchinato, A. (2016). Genome-wide association of coagulation properties, curd firmness modeling, protein percentage, and acidity in milk from Brown Swiss cows. Journal of dairy science, 99(5), 3654-3666. https://doi.org/10.3168/jds.2015-10078

JC9. - 20.01.2022.

Izlaganje znanstvenih radova predanih za WCGALP kongres.

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2021.

JC8. - 16.12.2021.

Serranito, B., Cavalazzi, M., Vidal, P., Taurisson-Mouret, D., Ciani, E., Bal, M., ... & Da Silva, A. (2021). Local adaptations of Mediterranean sheep and goats through an integrative approach. bioRxiv. https://doi.org/10.1101/2021.01.22.427461

JC7. - 09.12.2021.

Yurtman, E., Özer, O., Yüncü, E., Dağtaş, N. D., Koptekin, D., Çakan, Y. G., ... & Özer, F. (2021). Archaeogenetic analysis of Neolithic sheep from Anatolia suggests a complex demographic history since domestication. Communications Biology, 4(1), 1-11. https://doi.org/10.1038/s42003-021-02794-8

JC6. - 25.11.2021.

Ristov, S., Brajkovic, V., Cubric-Curik, V., Michieli, I., & Curik, I. (2016). MaGelLAn 1.0: a software to facilitate quantitative and population genetic analysis of maternal inheritance by combination of molecular and pedigree information. Genetics Selection Evolution, 48(1), 1-10. https://doi.org/10.1186/s12711-016-0242-9 

JC5. - 12.11.2021.

Furholt, M. (2021). Mobility and social change: Understanding the European Neolithic period after the archaeogenetic revolution. Journal of Archaeological Research, 1-55. https://doi.org/10.1007/s10814-020-09153-x

JC4. - 04.11.2021.

Kammeraad, D. - Tečaj o manipuliranju/radu sa sekvencama (WGS podaci) u SVS programu (Golden Helix)

JC3. - 28.10.2021.

Chen, Z. H., Zhang, M., Lv, F. H., Ren, X., Li, W. R., Liu, M. J., ... & Li, M. H. (2018). Contrasting patterns of genomic diversity reveal accelerated genetic drift but reduced directional selection on X-chromosome in wild and domestic sheep species. Genome biology and evolution, 10(5), 1282-1297. https://doi.org/10.1093/gbe/evy085

JC2. - 21.10.2021.

Ciani, E., Mastrangelo, S., Da Silva, A., Marroni, F., Ferenčaković, M., Ajmone-Marsan, P., ... & Lenstra, J. A. (2020). On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools. Genetics Selection Evolution, 52, 1-14. https://doi.org/10.1186/s12711-020-00545-7

JC1. - 07.10.2021.

Gernigon, K. (2016). Villages before houses? The neolithization of Europe reconsidered through the concept of the household. Palethnologie. Archéologie et sciences humaines, (8).  https://journals.openedition.org/palethnologie/527

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2019.

JC1. - 25.10.2019

Martin S H, Davey J W,Jiggins C D (2015) Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci. Mol.Biol.Evol. 32(1):244–257 DOI: 10.1093/molbev/msu269

JC2. - 8.11.2019

Park S D E et al. (2015) Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle. Genome Biology 16:234 DOI: 10.1186/s13059-015-0790-2

JC3. - 15.11.2019

Verdugo M P et al. (2019) Ancient cattle genomics, origins, and rapid turnover in the Fertile Crescent. Science 365, 173–176

JC4. – 29.11.2019

Chen N et al. (2018) Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia. Nature Communications 9:2337 DOI: 10.1038/s41467-018-04737-0